1. HMMER:

    1.1 EXECUTION: 
       - cp ~/workspace/hmmerobj/jar/hmmerobj.jar ~
       - export CLASSPATH=$CLASSPATH:/home/user/hmmerobj.jar
       - runcompss hmmerobj.HMMPfam /sharedDisk/Hmmer/smart.HMMs.bin /sharedDisk/Hmmer/256seq /home/user/out.txt 2 8 -A 222

    1.2 FINAL GRAPH GENERATION:
       - gengraph $HOME/APP_NAME.dot

    1.3 TRACING:
       - prepare4tracing ~/hmmerobj.jar

       - export CLASSPATH=$CLASSPATH:/home/user/tracing_hmmerobj.jar
       - runcompssext --app=hmmerobj.HMMPfam --tracing=true --cline_args="/sharedDisk/Hmmer/smart.HMMs.bin /sharedDisk/Hmmer/256seq /home/user/out.txt 2 8 -A 222"
       - gentrace /home/user/IT/hmmerobj.HMMPfam/
       - wxparaver /home/user/IT/hmmerobj.HMMPfam/*.prv

 2. BLAST:

    2.1 EXECUTION: 
       - cp ~/workspace/blastallone/jar/blast.jar ~
       - export CLASSPATH=$CLASSPATH:/home/user/blast.jar
       - runcompss blast.Blast true /home/user/workspace/blast/binary/blastall /sharedDisk/Blast/databases/swissprot/swissprot /sharedDisk/Blast/sequences/sargasso_test.fasta 8 /tmp/ /home/user/out.txt